Course Syllabus

 

 

Semester & Location:	Spring 2025 - DIS Copenhagen
Type & Credits:	Elective Course - 6 credits
Major Disciplines:	Neuroscience, Biology, Biochemistry/Chemistry
Prerequisites:	One year of biology and one year of biochemistry at university level. Experience/eagerness in working with large datasets and programming in e.g. R or python are advantages.
Research Mentor:	Thomas Folkman Hansen, Ph.D (current students please use the Canvas Inbox)
Research Director:	Susana Dietrich - research@dis.dk
Senior Research Manager:	Jeanette Erbo Wern jwe@dis.dk
Academic Support:	research@dis.dk
Time & Place:	See "Course Summary" below

Research Project Description

The Neurogenomics Group as Copenhagen University Hospital, a multidisciplinary team consisting of expert geneticists, bioinformaticians, and medical doctors, is dedicated to advancing our understanding of the genetic underpinnings of neurological disorders such as migraine and multiple sclerosis. Our group's primary objective is to bridge the gap between fundamental genetics research and clinical practice, focusing on translating scientific discoveries into tangible benefits for patients suffering from these debilitating conditions. 

The cornerstone of our group's research efforts is the utilization of cutting-edge genomic and bioinformatic techniques. By employing high-throughput sequencing technologies, including whole-genome sequencing (WGS), we are able to identify novel genetic variants and molecular pathways implicated in the development and progression of neurological disorders. Our bioinformaticians play a crucial role in analyzing and interpreting the vast amounts of data generated by these sequencing technologies, leading to the identification of disease-causing mutations and potential therapeutic targets. 

Our team of medical doctors, with their extensive clinical experience in treating patients with neurological disorders, provides invaluable insights into the practical aspects of our research. Their expertise ensures that our investigations are grounded in clinical relevance and have the potential to impact patient care in a meaningful way. Through close collaboration between our geneticists, bioinformaticians, and clinicians, we strive to develop novel diagnostic tools, risk prediction models, and targeted therapies for these complex neurological conditions. 

Research Mentor bibliography:  

•  Bjornsdottir, G., Chalmer, M.A., Stefansdottir, L. et al. Rare variants with large effects provide functional insights into the pathology of migraine subtypes, with and without aura. Nat Genet 55, 1843–1853 (2023). https://doi.org/10.1038/s41588-023-01538-0
• Kogelman, L.J.A., Falkenberg, K., Ottosson, F. et al. Multi-omic analyses of triptan-treated migraine attacks gives insight into molecular mechanisms. Sci Rep 13, 12395 (2023). https://doi.org/10.1038/s41598-023-38904-1
• Chalmer MA, Kogelman LJA et al.  Sex differences in clinical characteristics of migraine and its burden: a population-based study. European Journal of Neurology, 26 Mar 2023, 30(6):1774-1784 https://doi.org/10.1111/ene.15778 
• Banasik, K., Møller, P.L., Techlo, T.R. et al. DanMAC5: a browser of aggregated sequence variants from 8,671 whole genome sequenced Danish individuals. BMC Genom Data 24, 30 (2023). https://doi.org/10.1186/s12863-023-01132-7

Learning Objectives

The primary objective is for you to experience the world of research and gain skills that will prepare you for any future career you choose to pursue. By the end of the term, you will grasp the complexities of the research project and have made your own contribution to the project. You will have learned to communicate ideas and findings, both orally and in writing, to colleagues within your particular discipline, as well as peers from other disciplines.

Project-Specific Objectives Include:

Relevant literature search, data analysis including risk calculations, written discussion about the results of the data analysis and a summary report of the findings.

Research Mentors

Thomas Folkman Hansen, Ph.D. Received a PhD from Copenhagen University in 2009. Research Leader Copenhagen University Hospital and University from 2015 to the present. With DIS since 2023.

The 6-Credit Research Assistantship

The 6-Credit Research Assistantship (6RA) is an experiential learning opportunity that allows you to develop research skills in a professional research setting.  As a research assistant, you perform research under the supervision of a mentor (a lead scientist in the external research group). The mentor is able to offer both academic and professional advice. In addition to acquiring research experience, the goal is to develop a student/mentor relationship that benefits both the DIS student and Copenhagen-based research institutions.

• Approach to teaching

In general, the 6RA is designed for highly motivated students with a strong interest in developing their research skills. You will experience a hands-on class in a laboratory setting also including theoretical hours, where you will read, write and prepare your research. You will be part of an active research team and experience the dynamics of a European research institution. You will be provided with the basic scientific knowledge of the field and be introduced to the methods and techniques needed to conduct the experiments. Regarding teaching style, especially in the laboratory setting, the approach is "learning by doing". For the theoretical parts, you are expected to immerse yourselves in the topic and take responsibility so you achieve the highest learning outcome by actively participating in discussions and presentations. 

Responsibilities and Expectations of the Mentor

Your research project will be part of a larger, ongoing research project at the research institution. Your mentor and/or co-mentors will guide you on methodology, techniques and advise as to ethical considerations, provide feedback throughout the research process, and help you find resources to conduct your research on-site.  A gradual transition toward independence is encouraged as you gain more confidence transforming into a more self-directed and self-motivated project under the mentor’s guidance and supervision. It is important, that the project reflect your work, as a 6RA student, not only your mentor’s contribution.  

It is not expected that you pursue a project where you are able to obtain definitive publishable results. The project chosen and agreed upon between you and your mentor should be focused and designed to produce results within the DIS semester calendar. While it is not necessary for the results to be significant (in that the results find a solution to the problem or hypothesis proposed), arguably any results to the proposed question are significant to the next phase of a research project.  

Responsibility and Expectations of the Research Assistant

Specific expectations of you as a student is agreed upon with your mentor at the beginning of the semester. However, in general it requires that you:

1. Spend an average of 20 hours per week carrying out the research project. You will need to arrange a schedule with your mentor which will allow you to complete the required hours performing a combination of theoretical and hands-on research at the external research institution.
2. Arrange project check-in meetings with your external research mentor and/or co-mentor(s) at mutual agreed time intervals during the semester. Clear and continuous communication with your research mentor throughout the semester is a necessary part of the research project and it is expected that you initiates those meetings 
3. Submit semester assignments on time including a literature review,  a outline of the research project and a final research paper. Note your mentor may require additional assignments.
4. Present your research findings at the DIS Festival in a format appropriate to the project like a powerpoint or poster presentation. The final format is to be determined with your mentor during the semester and approved by DIS

During the theoretical part you are expected to read and write relevant scientific literature in relation to your research project and use your newly-gained knowledge to critically evaluate the research component, ask relevant questions and actively participate in research discussions within the field. During the practical part you are expected to actively engage by planning and performing your own experiments and carefully monitor the conducted experiments and analyzing the collected data. You are expected/encouraged to critically evaluate possible issues if experiments do not go as expected and come up with ideas to modifications or reflect on potential mistakes.

Overall, it is important to be enthusiastic about the project. Carrying out a research project is not a straightforward and predictable process as you are creating new (and at times unexpected) knowledge. This is part of what makes research exciting but at times also challenging! 

Learning outcomes for the Research Project include:

• Obtain hands-on research experience in s laboratory setting
• Learn the ability to plan, conduct and critically evaluate experimental laboratory data
• Obtain the ability to perform self-directed and self-motivated experimental research
• Be able to actively participate in scientific discussions with a critical approach to the research
• Learn how to write a research paper and present experimental data in a professional way
• Learn ethical standards and academic integrity in a research process
• Experience the authenticity of research, including the unpredictabilities, the unexpected challenges and unknowns that is part of doing research.

Description of Assignments and Grading Evaluation 

Throughout the semester, you are expected to fulfill various assignments. To be eligible for a passing grade in 6RA, all of the assignments must be completed. It will be your mentor that assess your work and assign your final grade.

Readings

The readings will be agreed upon with the Research Mentor at the beginning of the semester -
the exact content will differ depending on your background. You will receive guidance
concerning the basics of relevant concepts, study designs, methods of analysis, etc.

Evaluation and Grading

All research assistants are assessed on their participation, weekly status reports to the research mentor, self-evaluation and presentations to peers from other disciplines. Additional evaluation and grading depends on the individual research project and project phase and is outlined by the research mentor. It may include literature reviews, a poster presentation for an expert panel, a working paper, etc.

Participation* 10% of grade comprises attendance & active participation including homework in the research orientation, research workshops, and DIS Festival	20%
Literature review	5%
Research Project Outline	10%
Presentation at DIS Festival	10%
Final Paper	55%
TOTAL	100%

The literature summary review is an opportunity to seek out existing peer-reviewed articles and in that way enhance your scientific knowledge within the research area and kickstart your research project. In addition, it is essential that you have knowledge of previously produced research by the research institution with which they are working.

An outline of the research project will provide you with an overall research plan and help structure your research during the semester. By creating an outline, you will be able to better comprehend the objective of your efforts. The mentor will also be able to use the outline to assess areas in which you current knowledge and understanding may be lacking.

The research paper is the final product of your research assistantship. In the paper, you will explain your work throughout the semester including the methodologies you have used, the overall process, the project’s significance, and the contribution to the field of research in which you have engaged. Please note: this research paper is not produced with the intent of publishing, but if you put in the hours and effort it may end up being a publication. 

At the DIS Festival you will present the research you have carried out throughout the semester in a format agreed on with your mentor and approved by DIS

Participation is an central part of laboratory-based research! To receive full credit, you are required to be present at all the scheduled research sessions in and outside of the lab and actively participate and engage in the experimental work including the theoretical parts. The final participation grade is based on 

• Attendance and the level of preparation, planning, and conduction of the experimental research work at the research place as well as your level of self-directed and self-motivated research work
• Your overall contribution to research discussions with the research group in general, at journal clubs, and at project presentations

Research Orientation & Workshops

Days and times are available in the Course Summary, below.

Field Research (if applicable)

Some research projects include field research. Expenses related to fieldwork will be
covered by a DIS travel grant. The fieldwork will be planned with the research
mentor at the beginning of the semester.

Data

Note that many US colleges/universities require their students who are participating in research at home or abroad to acquire Institutional Review Board approval. Examples include:

• Research involving human subjects
• If the results of any research conducted during your semester with DIS involving human subjects are to be made public or published in the US

You are responsible for confirming whether home IRB-approval is required and, if so, for seeking the approval of your home schools IRB. In addition, all research conducted in Europe must adhere to GDPR regulations, as noted above.

Course Location

This DIS course will be located at an external institution - Please schedule first meeting with your mentor within the two first week of semesterstart and get location and direction.

Before Arrival to Copenhagen

Once accepted you will be connected to your mentor(s) via email. You will then contact your mentor(s) and briefly introduce yourself further. Please note some mentors may give you 10 – 15 hours of research literature to read before your semester start.

Disability and Resource Statement

Any student who has a need for accommodation based on the impact of a disability should contact Academic Support in Copenhagen (acadsupp@dis.dk) or in Stockholm (academics@disstockholm.se), depending on the project location. In order to receive accommodations, students should inform the instructor of approved DIS accommodations within the first two weeks of classes.

Academic Regulations

Please make sure to read the Academic Regulations on the DIS website. There, you will find regulations on:

• Course Enrollment and Grading
• Academic Expectations and Honor Code

Academic Honesty - Plagiarism and Violating the Rules of an Assignment

DIS expects that students abide by the highest standards of intellectual honesty in all academic work. DIS assumes that all students do their own work and credit all work or thought taken from others. Academic dishonesty will result in a final course grade of “F” and can result in dismissal. The students’ home universities will be notified. DIS reserves the right to request that written student assignments be turned in electronic form for submission to plagiarism detection software. See the Academic Handbook for more information, or ask your instructor if you have questions.

 

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